Application Data brokering

The data_brokering application contains the pages of Data brokering.

Key files of the « data_brokering » application

admin.py

class apps.data_brokering.admin.LabContactDetailCurationAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

class apps.data_brokering.admin.LabContactDetailCurationFileAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

class apps.data_brokering.admin.checklistAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

has_delete_permission(request, obj=None)

Return True if the given request has permission to change the given Django model instance, the default implementation doesn’t examine the obj parameter.

Can be overridden by the user in subclasses. In such case it should return True if the given request has permission to delete the obj model instance. If obj is None, this should return True if the given request has permission to delete any object of the given type.

class apps.data_brokering.admin.databaseAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

has_delete_permission(request, obj=None)

Return True if the given request has permission to change the given Django model instance, the default implementation doesn’t examine the obj parameter.

Can be overridden by the user in subclasses. In such case it should return True if the given request has permission to delete the obj model instance. If obj is None, this should return True if the given request has permission to delete any object of the given type.

class apps.data_brokering.admin.fieldAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

has_delete_permission(request, obj=None)

Return True if the given request has permission to change the given Django model instance, the default implementation doesn’t examine the obj parameter.

Can be overridden by the user in subclasses. In such case it should return True if the given request has permission to delete the obj model instance. If obj is None, this should return True if the given request has permission to delete any object of the given type.

class apps.data_brokering.admin.submissionAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

class apps.data_brokering.admin.submission_messageAdmin(model, admin_site)
has_add_permission(request)

Return True if the given request has permission to add an object. Can be overridden by the user in subclasses.

model.py

class apps.data_brokering.models.FinessCode(*args, **kwargs)

Finess Code

exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.LabContactDetailCuration(*args, **kwargs)

Laboratory Contact Details Curation

exception DoesNotExist
exception MultipleObjectsReturned
clean()

Clean function to check some fields after database checks

class apps.data_brokering.models.LabContactDetailCurationFile(*args, **kwargs)

Laboratory Contact Details Curation file

exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.checklist(id, original_id, name, version, description, instruction, url, rawfile, database)
exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.database(id, name, url, description)
exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.field(id, name, description, format, restriction, requirement, unit, group, example, checklist)
exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.submission(id, excel, fasta, team_origin, db, assigned_to, created, submission_by_ifb, closed, closed_date, closed_by)
exception DoesNotExist
exception MultipleObjectsReturned
class apps.data_brokering.models.submission_message(id, sub, date, message, message_by, message_type)
exception DoesNotExist
exception MultipleObjectsReturned

test.py

class apps.data_brokering.tests.dataBrokeringTestCase(methodName='runTest')
setUp()

Hook method for setting up the test fixture before exercising it.

tearDown()

Hook method for deconstructing the test fixture after testing it.

test_admin_checklist()

Test admin checklist

test_admin_database()

Test admin database

test_admin_field()

Test admin field

test_contact_detail_curation()

Test contact_detail_curation.

test_data_broker_only()

Test data_broker_only

test_help_page()

Test get help page

view.py

apps.data_brokering.views.database_help(request, db_name)

Render database help template

apps.data_brokering.views.download_LabContactDetailCurationFile(request, filename)

Request and return link to download LabContactDetailCurationFile

apps.data_brokering.views.metadata_detail(request, sub_id, db_name, status=None)

Render metadata_detail template

apps.data_brokering.views.metadata_finish_detail(request, sub_id, db_name)

Render metadata finish details

apps.data_brokering.views.submission_dashboard(request, db_name)

Render database help template

apps.data_brokering.views.submission_list(request, db_name, data_broker=None)

Render submission List

urls.py